Limit a cdm database to a cohort — limitCdmToCohort • PlasmodeSimulation

Creates a self-contained cdm database based only in the patients included in a cohort.

Usage

limitCdmToCohort(
  connectionDetails,
  cdmDatabaseSchema,
  exposureDatabaseSchema,
  exposureTable,
  outcomeDatabaseSchema,
  outcomeTable,
  resultDatabaseSchema,
  cohortObservationPeriodTable,
  includeOutcomePatients = FALSE,
  limitTableNames = "all",
  transferTableNames = "all",
  saveDir
)

Arguments

connectionDetails: The connection details to the database. Should be an object of type createConnectionDetails.
cdmDatabaseSchema: The database schema where the cdm database is stored.
exposureDatabaseSchema: The database schema where table with the exposure cohorts are stored.
exposureTable: The table where the exposure cohorts are stored.
outcomeDatabaseSchema: The database schema where the table with the outcome cohorts is stored.
outcomeTable: The table with the outcome cohorts.
resultDatabaseSchema: The database schema where the table with the combined cohorts will be stored. Needs write permission.
cohortObservationPeriodTable: The table with the new observation periods.
includeOutcomePatients: Whether to include patients in the outcome cohorts to the limiting step.
limitTableNames: The database tables which will be limited to the cohorts.
transferTableNames: The database tables which will be transferred unchanged to the new database.
saveDir: The directory where the limited cdm database will be stored.