Extract exposure cohorts — extractCohorts • PlasmodeSimulation

Extract the exposure cohorts from the exposure table. The function creates a new table where the combined exposure cohorts will be stored.

Usage

extractCohorts(
  connectionDetails,
  firstExposureOnly = TRUE,
  exposureTable,
  exposureIds,
  cohortTable = "combined_target",
  resultDatabaseSchema,
  exposureDatabaseSchema = resultDatabaseSchema,
  cdmDatabaseSchema
)

Arguments

connectionDetails: The connection details to the database. Should be an object of type createConnectionDetails.
firstExposureOnly: If a patient appears in more than one exposure cohort, only keep the earliest exposure, censoring at the start of later exposure.
exposureTable: The table where the exposure cohorts are stored.
exposureIds: The cohort definition ids of the exposure cohorts.
cohortTable: The table where the combined exposure cohorts will be stored.
resultDatabaseSchema: The database schema where the table with the combined cohorts will be stored. Needs write permission.
exposureDatabaseSchema: The database schema where table with the exposure cohorts are stored.
cdmDatabaseSchema: The database schema where the cdm database is stored.